Dr. Oya Deniz Beyan — Informatik 5 (Information Systems)

2020

Enabling Ad-hoc Reuse of Private Data Repositories through Schema Extraction

Published in Journal of Biomedical Semantics volume 11, Article number: 6 (2020) by Lars Gleim, Md. Rezaul Karim, Lukas Zimmermann, Oliver Kohlbacher, Holger Stenzhorn, Stefan Decker, Oya Beyan

Deep learning-based clustering approaches for bioinformatics

Published in Briefings in Bioinformatics by Md. Rezaul Karim, Oya Beyan, Michael Cochez, Stefan Decker

2019

NFDI4Health: Ein Konzept für eine föderierte Forschungsdateninfrastruktur personenbezogener Gesundheitsdaten.

Published in Deutsche Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie. 64. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie e.V. (GMDS) by Juliane Fluck, Iris Pigeot, Birte Lindstädt, Thomas Gübitz, Hajo Zeeb, Wolfgang Ahrens, Markus Löffler, Oana Brosteanu, Ulrich Lang, Constanze Curdt, Sebastian [Claudius] Semler, Oya Beyan, Hubertus Neuhausen, Jens Dierkes, Ulrich Sax, Harald Kusch, Henriette Senst, Thilo Muth, Sylvia Thun, Dietrich Kaiser, Jochen Dress, Wolfgang Müller, Martin Golebiewski

A Snapshot Neural Ensemble Method for Cancer Type Prediction Based on Copy Number Variations

Published in Neural Computing and Applications by Md. Rezaul Karim, Md Ashiqur Rahman, Joao Bosco Jares, Stefan Decker, Oya Beyan

Distributed Analytics on Sensitive Medical Data: The Personal Health Train

Published in Data Intelligence by Oya Beyan, Ananya Choudry, Johan van Soest, Oliver Kohlbacher, Lukas Zimmermann, Holger Stenzhorn, Md. Rezaul Karim, Michel Dumontier, Stefan Decker, Luiz Olavo Bonino da Silva Santos, Andre Dekker

Clinical Decision Support Services to Detect Potential Drug-Drug Interaction using Clinical Quality Language

Published by Binh-Phi Nguyen, Thomas Reese, Stefan Decker, Daniel C. Malone, Richard D. Boyce, Oya Beyan

Helping the consumers and producers of standards, repositories and policies to enable FAIR data

Published in Data Intelligence by Peter McQuilton, Dominique Batista, Oya Beyan, Ramon Granell, Simon Coles, Massimiliano Izzo, Allyson L. Lister, Robert Pergl, Philippe Rocca-Serra, Ben Schaap, Hugh Shanahan, Milo Thurston, Susanna-Assunta Sansone

Prognostically Relevant Subtypes and Survival Prediction for Breast Cancer Based on Multimodal Genomics Data

Published in IEEE Access by Md. Rezaul Karim, Galih Wicaksono, Ivan G. Costo, Stefan Decker, Oya Beyan

Drug-Drug Interaction Prediction Based on Knowledge Graph Embeddings and Convolutional-LSTM Network

Published by Md. Rezaul Karim, Michael Cochez, Joao Bosco Jares, Mumtaz Uddin, Oya Beyan, Stefan Decker

Design of Metadata Services for Clinical Data Interoperability in Germany

Published in Stud Health Technol Inform by Matthias Löbe, Oya Beyan, Sebastian Stäubert, Frank Meineke, Danny Ammon, Alfred Winter, Stefan Decker, Markus Löffler, Toralf Kirsten

Implementation of Clinical Decision Support Services to Detect Potential Drug-Drug Interaction Using Clinical Quality Language

Published in Stud Health Technol Inform by Binh-Phi Nguyen, Thomas Reese, Stefan Decker, Daniel C. Malone, Richard D. Boyce, Oya Beyan

OncoNetExplainer: Explainable Predictions of Cancer Types Based on Gene Expression Data

Published in 19th IEEE International Conference on Bioinformatics and Bioengineering (IEEE BIBE 2019) by Md. Rezaul Karim, Michael Cochez, Oya Beyan, Stefan Decker, Christoph Lange

Design of the SMITH Metadata Services

Published by Matthias Löbe, Oya Beyan, Sebastian Stäubert, Frank Meineke, Danny Ammon, Alfred Winter, Stefan Decker, Markus Löffler, Toralf Kirsten

2018

Research Data in the Fraunhofer Digital Project: Creating a FAIR Research Data Infrastructure and Culture

Published by Oya Beyan, Andrea Wuchner, Dirk Eisengräber-Pabst, Christoph Quix, Christian Zaschke, Oliver Schumacher

Representing medication guidelines for use in production rule systems in the context of POLYCARE project

Published by Jonas W. Könning, Carlos A. Velasco, Yehya Mohamad, Stefan Decker, Oya Beyan

A Distributed Analytics Platform to Execute FHIR-based Phenotyping Algorithms

Published by Md. Rezaul Karim, Binh-Phi Nguyen, Lukas Zimmermann, Toralf Kirsten, Matthias Löbe, Frank Meineke, Holger Stenzhorn, Oliver Kohlbacher, Stefan Decker, Oya Beyan

Minimum information for dielectric measurements of biological tissues (MINDER): A framework for repeatable and reusable data

Published by Emily Porter, Alessandra La Gioia, Saqib Salahuddin, Stefan Decker, Atif Shahzad, M. Adnan Elahi, Martin O'Halloran, Oya Beyan

Identification of SHACL Constraints from a Knowledge Graph

Published by Erhard Eibl, Siyabend Sakik, Niels Schneider, Oya Beyan, Nils Lukas

FAIR Ethics: Making Ethical Review Processes more Machine Actionable

Published by Daniel Mietchen, Verena Schwaiger, Oya Beyan

Schema Extraction for Privacy Preserving Processing of Sensitive Data

Published in Proceedings of the 2nd Workshop on Semantic Web solutions for large-scale biomedical data analytics (SeWeBMeDA) by Lars Gleim, Md. Rezaul Karim, Lukas Zimmermann, Oliver Kohlbacher, Holger Stenzhorn, Stefan Decker, Oya Beyan

Cancer Risk and Type Prediction Based on Copy Number Variations with LSTM and Deep Belief Networks

Published by Md. Rezaul Karim, Md Ashiqur Rahman, Stefan Decker, Oya Beyan

Mining maximal frequent patterns in transactional databases and dynamic data streams: A spark-based approach

Published by Md. Rezaul Karim, Michael Cochez, Oya Beyan, Chowdhury Farhan Ahmed, Stefan Decker

Smart medical information technology for healthcare (SMITH)

Published by Alfred Winter, Sebastian Stäubert, Danny Ammon, Stephan Aiche, Oya Beyan, Verena Bischoff, Philipp Daumke, Stefan Decker, Gert Funkat, Jan E. Gewehr, Armin de Greiff, Silke Haferkamp, Udo Hahn, Andreas Henkel, Toralf Kirsten, Thomas Klöss, Jörg Lippert, Matthias Löbe, Volker Lowitsch, Oliver Maassen, Jens Maschmann, Sven Meister, Rafael Mikolajczyk, Matthias Nüchter, Mathias W. Pletz, Erhard Rahm, Morris Riedel, Kutaiba Saleh, Andreas Schuppert, Stefan Smers, André Stollenwerk, Stefan Uhlig, Thomas Wendt, Sven Zenker, Wolfgang Fleig, Gernot Marx, André Scherag, Markus Löffler

Reproducible Health Data Service Workflows Adoption and Training Guide for Biomedical Service Centers

Published by Oya Beyan, Anthony Juehne, Kate LeMay, Ludovica Durst, Mary Uhlmansiek, Malcolm Wolski, Cynthia Hudson Vitale, Edwin Morley-Fletcher, Leslie D. McIntosh

2017

Towards a FAIR Sharing of Scientific Experiments: Improving Discoverability and Reusability of Dielectric Measurements of Biological Tissues

Published in Proceedings of the 10th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4LS 2017) by Md. Rezaul Karim, Matthias Heinrichs, Lars Gleim, Michael Cochez, Emily Porter, Alessandra La Gioia, Saqib Salahuddin, Martin O'Halloran, Stefan Decker, Oya Beyan

2016

An RDF Based Semantic Approach to Model Temporal Relations in Health Records

Published by Oya Beyan, Stefan Decker

Implementing an ethical approach to big data analytics in assistive robotics for elderly with dementia

Published by Heike Felzmann, Timur Beyan, Mark Ryan, Oya Beyan

A semantic architecture for preserving and interpreting the information contained in Irish historical vital records

Published by Christophe Debruyne, Oya Beyan, Rebecca Grant, Sandra Collins, Stefan Decker, Natalie Harrower

A Framework for Applying Data Integration and Curation Pipelines to Support Integration of Migrants and Refugees in Europe

Published by Oya Beyan, Siegfried Handschuh, Adamantios Koumpis, Garyfallos Fragidis, Stefan Decker

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